School of Science
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Research at AUT's School of Science is focused on key scientific issues with regional and global significance. The common theme connecting all research areas is sustainability – in the broadest sense as it relates to environmental and human health. Our research is closely allied to teaching and learning opportunities at undergraduate and postgraduate level within the school.
Research is organised in three thematic areas:
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- ItemMitigation of Vibrio-Induced Metabolic Perturbations in Argopecten purpuratus Scallop Larvae via Probiotic Pretreatment(MDPI AG, 2024-07-06) Muñoz-Cerro, K; Venter, L; Young, T; Alfaro, AC; Brokordt, K; Schmitt, PBackground: The decrease in the production of Argopecten purpuratus scallops in Chile is linked to extensive larval deaths in hatcheries caused by bacterial pathogens, particularly Vibrio genus, threatening sustainability. Traditional antibiotic practices raise concerns, urging research on eco-friendly strategies like bacterial probiotics. This study explores the metabolic responses of scallop larvae to Vibrio bivalvicida and evaluates the impact of the Psychrobacter sp. R10_7 probiotic on larval metabolism pre- and post-infection. Materials and Methods: Analysis detected 183 metabolite features, revealing significant changes in larval metabolites during Vibrio infection. Larvae pretreated with probiotics showed a metabolic profile comparable to non-infected larvae, indicating low impact on larval metabolome, likely due to probiotics antagonistic effect on pathogens. Results: Arachidonic acid, eicosatrienoic acid, docosahexaenoic acid (DHA), eicosapentaenoic acid (EPA), and docosapentaenoic acid (DPA) were significantly higher in non-pretreated/infected larvae compared to both pretreated/infected and non-pretreated/non-infected larvae, potentially supporting the activation of immune response in non-pretreated larvae to Vibrio infection. Identification of 76 metabolites provided insights into scallop larvae metabolome, highlighting the enriched metabolic pathways associated with energy provision and immune response. Conclusions: Probiotic pretreatment may mitigate metabolic disruptions in scallop larvae caused by Vibrio infection, suggesting a promising strategy for sustainable scallop production.
- ItemRarity and Life-History Strategies Shape Inbreeding and Outbreeding Effects on Early Plant Fitness(Elsevier BV, 2024-10) Bürli, Sarah; Ensslin, Andreas; Fischer, MarkusLocal abundance and regional distribution are two aspects of a species’ rarity. They are suggested to differentially alter genetic processes in plants: Locally rare species are hypothesized to suffer less from inbreeding and outbreeding than locally common species, thanks to genetic purging through long inbreeding histories and weaker local adaptations, respectively. Regionally rare species are hypothesized to be more susceptible to outbreeding, but less to inbreeding, compared to regionally common ones, due to small and declining range size. While this has major implications for plant conservation practices, we lack evidences and general understanding on how breeding effects on a plant’s early life fitness are related to its local and regional rarity. To investigate effects of inbreeding and outbreeding on plants’ early fitness, we performed self-, within- and between-population pollinations in eight pairs of closely related species differing in regional and local rarity. To avoid biases due to context dependency, we took species competitive ability, habitat resource-richness and resource-allocation strategy into account in the analyses. We then tested how inbreeding and outbreeding affected five fruit-, seed- and seedling-related traits. Inbreeding did not generally have more negative effects on early fitness of regionally rare and non-competitive species than on regionally common and competitive ones. Outbreeding was generally beneficial to early fitness of plant species across the gradients of regional rarity, competitive ability and habitat resource-richness. Our results show that outbreeding may be beneficial to the early fitness of plant species, including rare and non-competitive ones and may be considered for conservation strategies.
- ItemExploring Freshwater Stream Bacterial Communities as Indicators of Land Use Intensity(Springer Science and Business Media LLC, 2024-07-08) Hermans, Syrie; Gautam, Anju; Lewis, Gillian D; Neale, Martin; Buckley, Hannah L; Case, Bradley S; Lear, GavinBackground Stream ecosystems comprise complex interactions among biological communities and their physicochemical surroundings, contributing to their overall ecological health. Despite this, many monitoring programs ignore changes in the bacterial communities that are the base of food webs in streams, often focusing on stream physicochemical assessments or macroinvertebrate community diversity instead. We used 16S rRNA gene sequencing to assess bacterial community compositions within 600 New Zealand stream biofilm samples from 204 sites within a 6-week period (February–March 2010). Sites were either dominated by indigenous forests, exotic plantation forests, horticulture, or pastoral grasslands in the upstream catchment. We sought to predict each site’s catchment land use and environmental conditions based on the composition of the stream bacterial communities. Results Random forest modelling allowed us to use bacterial community composition to predict upstream catchment land use with 65% accuracy; urban sites were correctly assigned 90% of the time. Despite the variation inherent when sampling across a ~ 1000-km distance, bacterial community data could correctly differentiate undisturbed sites, grouped by their dominant environmental properties, with 75% accuracy. The positive correlations between actual values and those predicted by the models built using the stream biofilm bacterial data ranged from weak (average log N concentration in the stream water, R2 = 0.02) to strong (annual mean air temperature, R2 = 0.69). Conclusions Freshwater bacterial community data provide useful insights into land use impacts on stream ecosystems; they may be used as an additional measure to screen stream catchment attributes.
- ItemEffects of Sediment Disturbance by the Heart Urchin Echinocardium cordatum on the Sediment–Seawater Solute Exchange: An Exclusion Experiment(AIMS Press, 2024-07-12) McLeod, Roen; Simone, Michelle; Vopel, KaySpatangoid heart urchins are dominant bioturbators in marine soft-sediment ecosystems worldwide. Their repeated sediment reworking prevents biogeochemical sediment stratification and colonization by other species, with implications for sedimentary reaction processes that affect the local sediment–seawater solute exchange. Here, we used a simple exclusion experiment to investigate how a subtidal Echinocardium cordatum population (18.2 6.7 individuals m−2), foraging at an individual speed of ~45 cm per day affects the sediment–seawater solute exchange. To do so, we removed all heart urchins from eight one-meter-diameter areas of the 10-m deep seafloor of Man O’War Bay, Hauraki Gulf, New Zealand, and prevented recolonization and thus sediment reworking for 56 days. Subsequently, we measured the sediment–seawater exchange of O2, NO3–, NO2–, NH4+, and N2 both within and outside the exclusion areas, under light or dark conditions, and found no difference. The absence of a legacy effect of foraging E. cordatum after their removal suggests that, at least in this habitat, their influence on the sediment–seawater solute exchange may be limited to sediment being displaced in the immediate surrounding of the urchin. This unexpected result underlines the importance of evaluating the influence of bioturbators on the sediment–seawater solute exchange in the context of local environmental conditions, animal behavior, and population characteristics.
- ItemBioremediation of Oily Hypersaline Soil via Autochthonous Bioaugmentation with Halophilic Bacteria and Archaea(Elsevier BV, 2024-02-28) Lee, KC; Archer, SDJ; Kansour, MK; Al-Mailem, DMKuwaiti hypersaline soil samples were contaminated with 5 % (w/w) weathered Kuwaiti light crude oil and bioaugmented with autochthonous halophilic hydrocarbonoclastic archaeal and bacterial strains, two each, individually and as consortia. Residual oil contents were determined, and microbial communities were analyzed by culture-dependent and culture-independent approaches initially and seasonally for one year. After one year of the bioremediation process, the mean oil degradation rate was similar across all treated soils including the controlled unbioaugmented one. Oil hydrocarbons were drastically reduced in all soil samples with values ranging from 82.7 % to 93 %. During the bioremediation process, the number of culturable oil-degrading bacteria increased to a range of 142 to 344 CFUx104 g−1 after 12 months of bioaugmentation. Although culture-independent analysis showed a high proportion of inoculants initially, none could be cultured throughout the bioremediation procedure. Within a year, microbial communities changed continually, and 33 species of halotolerant/halophilic hydrocarbonoclastic bacteria were isolated and identified belonged mainly to the three major bacterial phyla Actinobacteria, Proteobacteria, and Firmicutes. The archaeal phylum Halobacterota represented <1 % of the microbial community's relative abundance, which explains why none of its members were cultured. Improving the biodegradability of an already balanced environment by autochthonous bioaugmentation is more involved than just adding the proper oil degraders. This study emphasizes the possibility of a relatively large resistant population, a greater diversity of oil-degrading microorganisms, and the highly selective impacts of oil contamination on hypersaline soil bacterial communities.